Add peak score in Seurat object
cnv_add_score.RdThis function is used to add a score for each CN peak (loss or gain) in a Seurat object.
Usage
cnv_add_score(sobj, segments, table_cnv, scoring_fun = stats::median)Arguments
- sobj
A Seurat object (no default)
- segments
DATAFRAME : a dataframe containing start, stop and seg_name, to score cells for (no default)
- table_cnv
DATAFRAME : dataframe (genes x cells) containing CNV. Genes must be in the transcriptome order. Cells in table_cnv should be in sobj (no default).
- scoring_fun
FUNCTION : a function to aggregate table_cnv values for each segment. It could be mean, sum, median, or a custom function (default to stats::median)