Plot a wordcloud — plot_wordcloud • aquarius

Plot a wordcloud, for differentially expressed genes or over-representation analysis results.

Usage

plot_wordcloud(
  dataf,
  label,
  size_by,
  size_limit = Inf,
  max_size = 7,
  color_by = size_by,
  color_palette = NULL,
  ...
)

dataf: DATAFRAME : a dataframe containing the information to visualize. It can be the result of Seurat::FindMarkers or clusterProfiler::enrichGO (no default)
label: CHARACTER : a column of dataf corresponding to the words (no default)
size_by: CHARACTER : a column of dataf corresponding to the size of the words (no default)
size_limit: NUMERIC : the threshold (as a percentile, eg. 0.9) in size_by values above which all words will have the same size (default to Inf, no threshold)
max_size: NUMERIC : parameter for the ggplot2::scale_size_area function (default to 7)
color_by: CHARACTER : a column of dataf to color words by (default to size_by)
color_palette: CHARACTER : a vector of colors to plot words by color_by. If the values in color_by are between 0 and 1, the default aquarius::palette_GrOrBl. Otherwise, the default is aquarius::palette_BlWhRd with gray70 color associated with the 0.
...: other parameters passed to the ggwordcloud::geom_text_wordcloud_area function

A ggplot2 object